VISDB Viral Integration Site DataBase

VIS ID

TVIS30010604

Fusion event

HIV-UQCRFS1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q12

Reference genome

Start

End

29700005/29209098 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-615-3p ; hsa-mir-106b-5p ; hsa-mir-17-5p ; hsa-mir-450b-5p ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-548aw ; hsa-mir-205-3p ; hsa-mir-33a-3p ; hsa-mir-409-3p ; hsa-mir-10a-3p ; hsa-mir-23a-3p ; hsa-mir-23b-3p ; hsa-mir-130a-5p ; hsa-mir-23c ; hsa-mir-421 ; hsa-mir-505-3p ; hsa-mir-7159-5p ; hsa-mir-182-5p ; hsa-mir-1250-3p ; hsa-mir-153-5p ; hsa-mir-335-3p ; hsa-mir-4760-3p ; hsa-mir-5696 ; hsa-mir-579-3p ; hsa-mir-6081 ; hsa-mir-664a-3p ; hsa-mir-664b-3p ; hsa-mir-6874-5p ; hsa-mir-1184 ; hsa-mir-1285-3p ; hsa-mir-141-3p ; hsa-mir-196a-3p ; hsa-mir-200a-3p ; hsa-mir-25-3p ; hsa-mir-3187-5p ; hsa-mir-32-5p ; hsa-mir-363-3p ; hsa-mir-3672 ; hsa-mir-367-3p ; hsa-mir-4325 ; hsa-mir-4329 ; hsa-mir-4418 ; hsa-mir-509-3-5p ; hsa-mir-509-5p ; hsa-mir-5189-5p ; hsa-mir-612 ; hsa-mir-661 ; hsa-mir-6860 ; hsa-mir-6864-3p ; hsa-mir-7156-3p ; hsa-mir-7703 ; hsa-mir-873-3p ; hsa-mir-92a-3p ; hsa-mir-92b-3p ; hsa-mir-939-3p

Nearest miRNA

hsa-mir-10395/Upstream/8809744; hsa-let-7e/Downstream/5913602;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/115741, chr19-CpG: 91/Downstream/3565

Upstream sequence

TCTCAACTGGGGCACTTCTAGTCTAGGCCATAAAAGAGCTCAAATGAATGTTAAACAAATAATTACTATGTAGTACTTTGGGAGCAAGGAGTTTCTTTGG

Downstream sequence

TAGTTTAAAAAACAAAAACAAGACACAGTTACATCCCTCTCTCCAATACTATTTTTAAATATCTGACCAAAAAAAAATTTTACCTAGTACCACTTTTAGG