VISDB Viral Integration Site DataBase

VIS ID

TVIS30010607

Fusion event

HIV-ZNF850 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.12

Reference genome

Start

End

37248654/36757752 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-5571-5p ; hsa-mir-758-5p ; hsa-mir-655-3p ; hsa-mir-374c-5p ; hsa-mir-4517 ; hsa-mir-5706 ; hsa-mir-4782-5p ; hsa-mir-516b-5p ; hsa-mir-1299 ; hsa-mir-466 ; hsa-mir-6124 ; hsa-mir-3148 ; hsa-mir-5585-5p ; hsa-mir-548ax ; hsa-mir-548ao-5p ; hsa-mir-6128 ; hsa-mir-875-3p ; hsa-mir-4643 ; hsa-mir-4789-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-511-5p ; hsa-mir-6830-3p ; hsa-mir-616-3p ; hsa-mir-494-5p ; hsa-mir-410-5p ; hsa-mir-323b-5p ; hsa-mir-196b-5p ; hsa-mir-196a-5p ; hsa-mir-6831-5p ; hsa-mir-3927-3p ; hsa-mir-522-3p ; hsa-mir-4694-3p ; hsa-mir-224-3p ; hsa-mir-1273e ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-6807-5p ; hsa-mir-5682 ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-6499-3p ; hsa-mir-2467-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-1827 ; hsa-mir-6840-3p ; hsa-mir-4257 ; hsa-mir-4459 ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-4695-5p ; hsa-mir-6871-3p ; hsa-mir-29c-3p ; hsa-mir-29b-3p ; hsa-mir-29a-3p ; hsa-mir-4662a-3p ; hsa-mir-574-5p ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-190b ; hsa-mir-190a-5p ; hsa-mir-511-3p ; hsa-mir-410-3p ; hsa-mir-6864-3p ; hsa-mir-4524a-3p ; hsa-mir-3672 ; hsa-mir-4461 ; hsa-mir-7109-3p ; hsa-mir-25-3p ; hsa-mir-32-5p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-4325 ; hsa-mir-7703 ; hsa-mir-92a-3p ; hsa-mir-92b-3p ; hsa-mir-1273a ; hsa-mir-4486 ; hsa-mir-4649-5p ; hsa-mir-508-5p ; hsa-mir-661 ; hsa-mir-6729-5p ; hsa-mir-873-3p ; hsa-mir-939-3p

Nearest miRNA

hsa-mir-10395/Upstream/1412125; hsa-let-7e/Downstream/2651871;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/70065, chr19-CpG: 53/Downstream/14727

Upstream sequence

actgccaccacacccggctaattttttgtgtgtttgttttagtagagatgttgtttcactgtgttgattaggctggtcaccatgttgaccagaccactcc

Downstream sequence

tgacctcaagtgatctgcacacctcagcctcccaaagtgctgggatttacaggtgtgagccactgcgcccagcctctttttctttttgagacagggtctt