Basic Information
VIS ID
TVIS30010609
Fusion event
HIV-YIF1B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
38799171/38308531 (Hg38)
End
38799171/38308531 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
YIF1B
miRNAs that regulate target gene
hsa-mir-16-5p ; hsa-mir-103a-3p ; hsa-mir-92a-3p ; hsa-mir-3178 ; hsa-mir-3190-3p ; hsa-mir-4733-3p ; hsa-mir-4767 ; hsa-mir-6499-5p ; hsa-mir-6799-5p
Nearest miRNA
hsa-mir-10395/Upstream/2962904; hsa-let-7e/Downstream/1101092;
Nearest TSS
ENST00000633603/Upstream/896; ENST00000588137/Downstream/608;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/43472, chr19-CpG: 43/Downstream/7264
Upstream sequence
GGGCCAGGCCCGCACCTCAGACAGGACCATCCTGGCTGCTGCTGGAGTAGGGGTGCAGTGGGGAGCTGGTGATGACAGAGGGAGGATGAGGATGGGTCTG
Downstream sequence
GTAGTAGAGGCCAAGAGGAAGGGTGGATGGAGAAGGGTCACCCAGCACAGGGGATGGTGACGCAATGCATGTGGGTAGGAAGGACAGGGAAGAGGCGAGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate