VISDB Viral Integration Site DataBase

VIS ID

TVIS30010612

Fusion event

HIV-HNRNPUL1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.2

Reference genome

Start

End

41794145/41288240 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-130b-3p ; hsa-mir-34a-5p ; hsa-mir-320b ; hsa-mir-1229-3p ; hsa-mir-877-5p ; hsa-mir-423-5p ; hsa-mir-106b-3p ; hsa-mir-93-3p ; hsa-mir-671-5p ; hsa-mir-18a-3p ; hsa-mir-193b-3p ; hsa-mir-423-3p ; hsa-mir-151a-3p ; hsa-mir-320a ; hsa-mir-191-5p ; hsa-mir-23b-3p ; hsa-mir-23a-3p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-629-3p ; hsa-mir-4320 ; hsa-mir-4450 ; hsa-mir-134-3p ; hsa-mir-4259 ; hsa-mir-4425 ; hsa-mir-4778-5p ; hsa-mir-7114-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-486-3p ; hsa-mir-518a-5p ; hsa-mir-527 ; hsa-mir-581 ; hsa-mir-2110 ; hsa-mir-4471 ; hsa-mir-548at-5p ; hsa-mir-8059 ; hsa-mir-100-3p ; hsa-mir-6081 ; hsa-mir-6510-5p ; hsa-mir-92a-1-5p ; hsa-mir-296-3p ; hsa-mir-887-5p ; hsa-mir-4459 ; hsa-mir-4693-3p ; hsa-mir-4779 ; hsa-mir-5192 ; hsa-mir-5586-3p ; hsa-mir-6823-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-6867-3p ; hsa-mir-1273h-5p ; hsa-mir-4713-5p ; hsa-mir-6839-3p ; hsa-mir-4507 ; hsa-mir-3940-5p ; hsa-mir-3163 ; hsa-mir-147a ; hsa-mir-6818-5p ; hsa-mir-3115 ; hsa-mir-6890-5p ; hsa-mir-3675-5p ; hsa-mir-1207-5p ; hsa-mir-138-5p ; hsa-mir-1909-3p ; hsa-mir-3165 ; hsa-mir-4456 ; hsa-mir-4763-3p ; hsa-mir-6722-3p ; hsa-mir-6880-5p ; hsa-mir-6894-5p ; hsa-mir-7154-3p ; hsa-mir-765 ; hsa-mir-766-5p ; hsa-mir-7847-3p ; hsa-mir-8071 ; hsa-mir-143-5p ; hsa-mir-2053 ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-302e ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-4668-3p ; hsa-mir-519a-3p ; hsa-mir-519b-3p ; hsa-mir-519c-3p ; hsa-mir-520a-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-520e ; hsa-mir-5580-3p ; hsa-mir-8068 ; hsa-mir-96-3p

Nearest miRNA

hsa-mir-10395/Upstream/918333; hsa-let-7e/Downstream/581387;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/23032, chr19-CpG: 38/Downstream/21880

Upstream sequence

CCACCCATTTTTCACATATACCCTCCCCAGCATGTGAACCCACTGGTACTCGGGGTTTCATCTTTTTTTTTTTTTTTTTAACTTGTATGTCTTGGGGGtc

Downstream sequence

tttttatttatttaatttttttgagacagagttttgctcttgttgcccaggctggagtgcaatggcatgatcttggctcaccacaacctccgcctcccag