Basic Information
VIS ID
TVIS30010614
Fusion event
HIV-OPA3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.32
Reference genome
End
46082919/45579661 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
Target gene
miRNAs that regulate target gene
hsa-mir-1229-3p ; hsa-mir-484 ; hsa-mir-3615 ; hsa-mir-6516-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-455-3p ; hsa-mir-500a-3p ; hsa-mir-6807-5p ; hsa-mir-4650-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-661 ; hsa-mir-6499-3p ; hsa-mir-767-5p ; hsa-mir-98-5p ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-6823-3p ; hsa-mir-4537 ; hsa-mir-2114-3p ; hsa-mir-5186 ; hsa-mir-3192-5p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-6831-5p ; hsa-mir-3927-3p ; hsa-mir-495-5p ; hsa-mir-542-3p ; hsa-mir-4504 ; hsa-mir-4764-5p ; hsa-mir-6077 ; hsa-mir-7-5p ; hsa-mir-4462 ; hsa-mir-1252-5p ; hsa-mir-4501 ; hsa-mir-1265 ; hsa-mir-7849-3p ; hsa-mir-640 ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-378a-5p ; hsa-mir-4680-5p ; hsa-mir-4635 ; hsa-mir-3922-3p ; hsa-mir-3653-5p ; hsa-mir-3176 ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-3620-3p ; hsa-mir-125a-3p ; hsa-mir-504-5p ; hsa-mir-6878-3p ; hsa-mir-4757-5p ; hsa-mir-6744-3p ; hsa-mir-6778-3p ; hsa-mir-6836-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-136-5p ; hsa-mir-4264 ; hsa-mir-4797-3p ; hsa-mir-6747-3p ; hsa-mir-6769b-3p ; hsa-mir-3183 ; hsa-mir-4723-3p ; hsa-mir-6752-3p ; hsa-mir-1910-5p ; hsa-mir-10b-5p ; hsa-mir-10a-5p
Nearest miRNA
hsa-mir-10395/Upstream/142957; hsa-let-7e/Downstream/59333;
Upstream sequence
tgtaaggtacctgagggcaagatgttttgctttttcctgcctgttgtatctataacatctacgtgacagccatgaccctatgccaggcactgacttaaca
Downstream sequence
ttttatatccatttacttaatcctcaccacaacacaataaatattattTACAGCATAATGCATACATAGTATATACACAAaataataataataataataa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate