Basic Information
VIS ID
TVIS30010628
Fusion event
HIV-ZNF331 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.42
Reference genome
GRCh37/hg19
Start
54042732/53539478 (Hg38)
End
54042732/53539478 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
ZNF331
miRNAs that regulate target gene
hsa-mir-20a-5p ; hsa-mir-4474-3p ; hsa-mir-7108-5p ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-6815-3p ; hsa-mir-5696 ; hsa-mir-6828-5p ; hsa-mir-4729 ; hsa-mir-6510-3p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-31-5p ; hsa-mir-661 ; hsa-mir-873-3p ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-5586-3p ; hsa-mir-508-5p
Nearest miRNA
hsa-let-7e/Upstream/1257585; hsa-mir-10394/Downstream/127201;
Nearest TSS
ENST00000633603/Upstream/690; ENST00000505426/Downstream/15052;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/875, chr19-CpG: 83/Downstream/14682
Upstream sequence
GCCTCTTAGCTTTTTGAGCCTTCTGAAGATAGGCTTGTGAGGAGGGTGAAATGCATTAACACGCATAAAACCCATAGACGCGCACCCCTGAGTGGGAGTG
Downstream sequence
CACAGTGAGTGCTGCTGTTTTGTGCTAAGTCTGGATGTCTGTACATCAGGAGCAACGTACATATGAAGGTAACTGGGATGGGTGTTTGCAGGTTCACAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate