Basic Information
VIS ID
TVIS30010629
Fusion event
HIV-TFPT integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.42
Reference genome
GRCh37/hg19
Start
54616629/54113249 (Hg38)
End
54616629/54113249 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
TFPT
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-let-7e/Upstream/130852; hsa-mir-10394/Downstream/168860;
Nearest TSS
ENST00000633603/Upstream/4545; ENST00000467851/Downstream/1825;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/9967, chr19-CpG: 45/Downstream/2023
Upstream sequence
ttgaggctttaacccccagtacctcaggatcaccttatatggagacagtgtcgttacaaaagtaatcaagttcaaatgaagccagtgggtgggccctaat
Downstream sequence
ccagtatgactggagtccttataaaaagggtaaattgggacacagacacacacacagggagcagcaatgtgaagatgaaggcggagatcagggtgatgtt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate