VISDB Viral Integration Site DataBase

VIS ID

TVIS30010630

Fusion event

HIV-chr19 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.42

Reference genome

Start

End

55551823/55040455 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

LOC107985325 ; RDH13

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-6499-3p ; hsa-mir-298 ; hsa-mir-1827 ; hsa-mir-4537 ; hsa-mir-5186 ; hsa-mir-1247-3p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-495-5p ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-4480 ; hsa-mir-450b-5p ; hsa-mir-4539 ; hsa-mir-1292-3p ; hsa-mir-3691-3p ; hsa-mir-5585-3p ; hsa-mir-6738-3p ; hsa-mir-5001-3p ; hsa-mir-4727-5p ; hsa-mir-6778-3p ; hsa-mir-3182 ; hsa-mir-4715-3p ; hsa-mir-6869-5p ; hsa-mir-1200 ; hsa-mir-1227-3p ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-660-3p ; hsa-mir-552-3p ; hsa-mir-5095 ; hsa-mir-7151-3p ; hsa-mir-6789-3p ; hsa-mir-6872-3p ; hsa-mir-4438 ; hsa-mir-302c-5p ; hsa-mir-4684-5p ; hsa-mir-3143 ; hsa-mir-6849-3p ; hsa-mir-3675-3p ; hsa-mir-6771-3p ; hsa-mir-548c-3p ; hsa-mir-4279 ; hsa-mir-7977 ; hsa-mir-377-3p ; hsa-mir-1976 ; hsa-mir-1228-3p ; hsa-mir-4722-5p ; hsa-mir-4768-3p

Nearest miRNA

hsa-let-7e/Upstream/395072; hsa-mir-10394/Downstream/82770;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/6901, chr19-CpG: 69/Downstream/22315

Nearby gene

GP6(No orient, 2191)

Upstream sequence

caccgtgttagccaggatggtctcgatctcctgaccttgtgatttggcctcccaaagtgctgggaatacaggcatgagccaccgcgcccggccagtgccg

Downstream sequence

ttgacttgtatgtgcacttacaggtggttaaaatgAGAACTATCAGGGTGTTGATATCTAAAAACCTCCCTGCCATCATCTTCCCTACATCTCTCATTCA