VISDB Viral Integration Site DataBase

VIS ID

TVIS30010638

Fusion event

HIV-ZSCAN22 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.43

Reference genome

Start

End

58843886/58332520 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-629-3p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-7702 ; hsa-mir-4279 ; hsa-mir-6867-3p ; hsa-mir-4713-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-6891-3p ; hsa-mir-6072 ; hsa-mir-6832-3p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-4524b-3p ; hsa-mir-7977 ; hsa-mir-675-5p ; hsa-mir-4466 ; hsa-mir-4726-5p ; hsa-mir-4640-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-4746-3p ; hsa-mir-764 ; hsa-mir-383-3p ; hsa-mir-6895-5p ; hsa-mir-4779 ; hsa-mir-6891-5p ; hsa-mir-3173-3p ; hsa-mir-4684-5p ; hsa-mir-4683 ; hsa-mir-4786-5p ; hsa-mir-4738-3p ; hsa-mir-664a-5p ; hsa-mir-4794 ; hsa-mir-8073 ; hsa-mir-221-5p ; hsa-mir-4793-5p ; hsa-mir-3675-3p ; hsa-mir-6502-3p ; hsa-mir-1247-3p ; hsa-mir-1273g-3p ; hsa-mir-1292-3p ; hsa-mir-3612 ; hsa-mir-4252 ; hsa-mir-4327 ; hsa-mir-4537 ; hsa-mir-455-3p ; hsa-mir-6499-3p ; hsa-mir-650 ; hsa-mir-6516-5p ; hsa-mir-1273h-5p ; hsa-mir-149-3p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-30b-3p ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-3165 ; hsa-mir-3622b-5p ; hsa-mir-363-5p ; hsa-mir-3656 ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-3929 ; hsa-mir-4419b ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4478 ; hsa-mir-4649-3p ; hsa-mir-4722-5p ; hsa-mir-4728-5p ; hsa-mir-4768-3p ; hsa-mir-485-5p ; hsa-mir-5197-5p ; hsa-mir-5690 ; hsa-mir-6511a-5p ; hsa-mir-665 ; hsa-mir-6745 ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6788-5p ; hsa-mir-6799-5p ; hsa-mir-6808-5p ; hsa-mir-6883-5p ; hsa-mir-6884-5p ; hsa-mir-6888-5p ; hsa-mir-6893-5p ; hsa-mir-7106-5p ; hsa-mir-7160-5p ; hsa-mir-887-5p ; hsa-mir-890 ; hsa-mir-940

Nearest miRNA

hsa-let-7e/Upstream/2944278; hsa-mir-10394/Downstream/2168;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/5019, chr19-CpG: 51/Downstream/14567

Upstream sequence

ctgccaccacacccagctaatttttgtattttttagtagagacggggtttcactgtgttggccaggctggtcttgaactcctgacctcaggtgatctacc

Downstream sequence

cacctcggcctcccaaagtgctgggatcacaggtgtgagccaccgtgccctgccgtgtctttcttcttttacttagcatcatgttttcaaggttcatcca