Basic Information
VIS ID
TVIS30010645
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
22505555/22282683 (Hg38)
End
22505555/22282683 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3125/Upstream/2934178; hsa-mir-10b/Downstream/3045957;
Nearest TSS
ENST00000437798/Upstream/317003; ENST00000419013/Downstream/94911;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1238594, chr2-CpG: 256/Downstream/1102175
Upstream sequence
GATTCTGAAATCCATAGTAGGGCTACTTCATGAAAGGTGTACTTCAAAGGTATACTCCAAATGGTCTGTTATTTTTTGTAagtgtaaacatcttacatag
Downstream sequence
ccacggcacatttgccaaaactatgaagtaaacgttggtatattactactgctcactaaattacagactttgtattaattataatttttaaaattCTCTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate