Basic Information
VIS ID
TVIS30010646
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p23.3
Reference genome
GRCh37/hg19
Start
27469330/27246462 (Hg38)
End
27469330/27246462 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1301/Upstream/1917741; hsa-mir-10b/Downstream/749905;
Nearest TSS
ENST00000437798/Upstream/4541; ENST00000420191/Downstream/11358;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/28613, chr2-CpG: 257/Downstream/15687
Nearby gene
CAD(No orient, 2670)
Upstream sequence
ACAATACCTTTGGGCCTGTTCCACATCCACTGAGAAACAACTTCATATCTGCCATGTAATTGTCATGAAGCATAAAAAGTTAGTTTGCTTCCTGAGGTAC
Downstream sequence
TTAAGAGGTTTGATCTATTTCTTCTATAAGAAACATTtatatgccaagcactgttctaagcgctttacagatacatccctttgacacttggatgaatcct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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