Basic Information
VIS ID
TVIS30010648
Fusion event
HIV-GTF3C2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p23.3
Reference genome
GRCh37/hg19
Start
27553994/27331127 (Hg38)
End
27553994/27331127 (Hg38)
Orient
+
Location type
Intronic
Target gene
GTF3C2
miRNAs that regulate target gene
hsa-mir-24-3p ; hsa-mir-16-5p ; hsa-mir-10a-5p ; hsa-mir-92a-3p
Nearest miRNA
hsa-mir-1301/Upstream/2002406; hsa-mir-10b/Downstream/665240;
Nearest TSS
ENST00000437798/Upstream/1667; ENST00000608473/Downstream/4301;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/22530, chr2-CpG: 74/Downstream/25302
Upstream sequence
cagggaatgaatgcagcacctatgaacctttcttgaaaaagtttgttgacgatgaattatagccatgcaatataaataattcagcaattggaggggagac
Downstream sequence
taagataaatggactggtagaggcactcaatcaagtttaggaattaagaaagcagaacagcatcgagaatcatgtaccttgacaatgtaagaataatacc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate