VISDB Viral Integration Site DataBase

VIS ID

TVIS30010650

Fusion event

HIV-CLIP4 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

p23.2

Reference genome

Start

End

29354035/29131169 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-21-5p ; hsa-mir-21-3p ; hsa-mir-548c-3p ; hsa-mir-4670-3p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-96-3p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-20b-5p ; hsa-mir-511-3p ; hsa-mir-520e ; hsa-mir-520f-3p ; hsa-mir-519c-3p ; hsa-mir-520a-3p ; hsa-mir-526b-3p ; hsa-mir-519b-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-519d-3p ; hsa-mir-520d-3p ; hsa-mir-519a-3p ; hsa-mir-577 ; hsa-mir-1251-3p ; hsa-mir-302e ; hsa-mir-548t-5p ; hsa-mir-4711-5p ; hsa-mir-5010-3p ; hsa-mir-548az-5p ; hsa-mir-7112-3p ; hsa-mir-651-3p ; hsa-mir-7157-3p ; hsa-mir-5008-3p ; hsa-mir-6737-3p ; hsa-mir-6889-3p ; hsa-mir-323b-3p ; hsa-mir-3184-3p ; hsa-mir-1264 ; hsa-mir-298 ; hsa-mir-4329 ; hsa-mir-6761-5p ; hsa-mir-4251 ; hsa-mir-922 ; hsa-mir-4274 ; hsa-mir-3200-5p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-510-3p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-3152-3p ; hsa-mir-4719 ; hsa-mir-548n

Nearest miRNA

hsa-mir-1301/Upstream/1134720; hsa-mir-10b/Downstream/3400984;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/15126, chr2-CpG: 147/Downstream/788796

Upstream sequence

aggatttttaaagtatttagtaagtgctcagcaAATGTTCATAATATTTTCCTTATTTAGATACTTCTGATTTTTTTTTAGCATCTAAAATATTTGTATC

Downstream sequence

ATTTGAACCTTGGttttattgtttattattttcaatatatttatttgaaacttttagtaaatttaatttGCATCTTTTTTTATTTCAGAATTTTCTTTCT