VISDB Viral Integration Site DataBase

VIS ID

TVIS30010652

Fusion event

HIV-SOCS5 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

p21

Reference genome

Start

End

46952953/46725814 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-21-5p ; hsa-mir-9-5p ; hsa-mir-16-5p ; hsa-mir-92a-3p ; hsa-mir-374b-3p ; hsa-mir-4274 ; hsa-mir-4524a-5p ; hsa-mir-4524b-5p ; hsa-mir-5689 ; hsa-mir-203b-3p ; hsa-mir-4793-3p ; hsa-mir-6780b-3p ; hsa-mir-4435 ; hsa-mir-7108-5p ; hsa-mir-15a-5p ; hsa-mir-214-3p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-651-3p ; hsa-mir-761 ; hsa-mir-3137 ; hsa-mir-3619-5p ; hsa-mir-6838-5p ; hsa-mir-323a-3p ; hsa-mir-493-5p ; hsa-mir-3686 ; hsa-mir-20b-3p ; hsa-mir-4496 ; hsa-mir-4778-5p ; hsa-mir-646 ; hsa-mir-543 ; hsa-mir-503-5p ; hsa-mir-4474-3p ; hsa-mir-663b ; hsa-mir-6886-3p ; hsa-mir-938 ; hsa-mir-6855-5p ; hsa-mir-3170 ; hsa-mir-5095 ; hsa-mir-7151-3p ; hsa-mir-193b-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6778-3p ; hsa-mir-7155-5p ; hsa-mir-150-5p ; hsa-mir-186-3p ; hsa-mir-3934-5p ; hsa-mir-512-3p ; hsa-mir-552-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-505-3p ; hsa-mir-33b-5p ; hsa-mir-33a-5p ; hsa-mir-7705 ; hsa-mir-4255 ; hsa-mir-208b-5p ; hsa-mir-208a-5p ; hsa-mir-4519 ; hsa-mir-142-3p ; hsa-mir-578 ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-7641 ; hsa-mir-4778-3p ; hsa-mir-1262 ; hsa-mir-3655 ; hsa-mir-3672 ; hsa-mir-4504 ; hsa-mir-4701-3p ; hsa-mir-5586-3p ; hsa-mir-661 ; hsa-mir-6736-5p ; hsa-mir-6742-3p ; hsa-mir-6776-5p ; hsa-mir-6864-3p ; hsa-mir-873-3p

Nearest miRNA

hsa-mir-1301/Upstream/11254328; hsa-mir-10b/Downstream/651861;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/25984, chr2-CpG: 67/Downstream/189513

Upstream sequence

tctttgttcttccttaattatagataatacattttttcccttgatatcatttctcttctatcctttagtaactccttcagagtggatctgctggtaatga

Downstream sequence

attctcataattttacctttattcaaaagtgtcctcattttacttacttccctagagtctgagttgacaattattttctttcaaccctttaaaaatgtgc