VISDB Viral Integration Site DataBase

VIS ID

TVIS30010659

Fusion event

HIV-PPP3R1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

p14

Reference genome

Start

End

68445506/68218374 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-30a-5p ; hsa-mir-183-5p ; hsa-mir-34a-5p ; hsa-mir-26b-5p ; hsa-mir-24-3p ; hsa-mir-532-3p ; hsa-mir-5189-3p ; hsa-mir-33a-3p ; hsa-mir-409-3p ; hsa-mir-376a-3p ; hsa-mir-369-3p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-9-3p ; hsa-mir-4714-3p ; hsa-mir-656-3p ; hsa-mir-6763-3p ; hsa-mir-6758-3p ; hsa-mir-5587-3p ; hsa-mir-4707-5p ; hsa-mir-4704-5p ; hsa-mir-651-3p ; hsa-mir-548as-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-578 ; hsa-mir-340-5p ; hsa-mir-3185 ; hsa-mir-3163 ; hsa-mir-5692a ; hsa-mir-629-3p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-623 ; hsa-mir-6734-3p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-17-5p ; hsa-mir-20b-5p

Nearest miRNA

hsa-mir-1301/Upstream/1860046; hsa-mir-10b/Downstream/885308;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/60265, chr2-CpG: 155/Downstream/33389

Upstream sequence

GGCTTTTAAACTCCTCAACGTACCTTTAATCTTATGTAAACTTAAAGGCTAATCAGTAAATTACCACATTCAATTAACTGACATATTGCCAATAGCTAGT

Downstream sequence

CTTTTTCTTGCAAGTTATAGCAGATAATTGCAATTTTCCAGAACTGGTTAATTTAATATTAGGTCACTTTAAATATCAAATATGTTAAAGTGAGGATAAA