VISDB Viral Integration Site DataBase

VIS ID

TVIS30010660

Fusion event

HIV-ZNF638 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

p13.2

Reference genome

Start

End

71591970/71364840 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

FRA2S ; FRA2E

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-30a-5p ; hsa-mir-106b-3p ; hsa-mir-27a-3p ; hsa-mir-16-5p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-2355-5p ; hsa-mir-1236-3p ; hsa-mir-877-3p ; hsa-mir-6793-3p ; hsa-mir-141-5p ; hsa-mir-629-3p ; hsa-mir-6867-3p ; hsa-mir-4713-5p ; hsa-mir-642a-5p ; hsa-mir-4795-3p ; hsa-mir-6743-3p ; hsa-mir-942-5p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-6870-3p ; hsa-mir-216a-5p ; hsa-mir-302c-5p ; hsa-mir-665 ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-6078 ; hsa-mir-4768-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6878-3p ; hsa-mir-6735-3p ; hsa-mir-4324

Nearest miRNA

hsa-mir-1285-2/Upstream/1111835; hsa-mir-10b/Downstream/3725972;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/32445, chr2-CpG: 64/Downstream/88588

Upstream sequence

TTATTGTGTCTAGTATAGTCTAAAATGCTGAATTCAAATGGAGATACCTTTAATTATATAAGGCATTCCttcttaaagtatggcccaaggatcgattggg

Downstream sequence

gtcctcaagatcttttaagagttctatgagatctcttttctaattacatgcctccatgaggctggattttctttatccagaagcagatataagaatttag