Basic Information
VIS ID
TVIS30010664
Fusion event
HIV-DNAH6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
85009575/84782451 (Hg38)
End
85009575/84782451 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S ; FRA2L
Target gene
DNAH6
Nearest miRNA
hsa-mir-1285-2/Upstream/4915868; hsa-mir-10b/Downstream/1001149;
Nearest TSS
ENST00000437798/Upstream/124144; ENST00000233143/Downstream/53053;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/265890, chr2-CpG: 77/Downstream/98156
Upstream sequence
GGCAAGCATATCCAGAGAGAGCCCTTTCTCTGAGGCCTTTATTTGTGCCCTCCCTACAGAAAGCTTTCTGGAAAGGTGAAAGCTCTGCAGATGATCTTGC
Downstream sequence
AAATCACTTTATTTAGTGCTGCTTATTAAGGTGAAGAGCTGCTCCTTTACAGAGTCCCCAGTCTGCTCTGGTCACTGAGCCAGCTCAGGGTTTAGCAGCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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