Basic Information
VIS ID
TVIS30010672
Fusion event
HIV-SAP130 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
128724110/127966536 (Hg38)
End
128724110/127966536 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
SAP130
miRNAs that regulate target gene
hsa-mir-218-5p
Nearest miRNA
hsa-mir-1285-2/Upstream/542918; hsa-mir-10b/Downstream/3524624;
Nearest TSS
ENST00000437798/Upstream/79980; ENST00000430075/Downstream/60757;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/79703, chr2-CpG: 165/Downstream/60389
Upstream sequence
tcacacctgtaatcctagcactctgggaggccgaggcgggcagatcatctgaggtcaggagttcgagacaagcctggccaacatggtgaaaccctgtctc
Downstream sequence
tactaaaaatacaaaaattagccggatgtggtggcgcatgcttgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacccaggaggcgg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate