Basic Information
VIS ID
TVIS30010680
Fusion event
HIV-CIR1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
175225644/174360916 (Hg38)
End
175225644/174360916 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2G
Target gene
CIR1
Nearest miRNA
hsa-mir-128-1/Upstream/5777898; hsa-mir-10b/Downstream/806717;
Nearest TSS
ENST00000437798/Upstream/8953; ENST00000488349/Downstream/19764;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/16568, chr2-CpG: 67/Downstream/125720
Upstream sequence
ATGTGTATAAATAATTTGAAATGACTTAACCATTGGTAATACCTAAAATAAAATAGCCAAAATTTGAAGTACTAATAAGGAACATCATTTTGACCTTTGA
Downstream sequence
AGTACTATGACTGGACAAGTTTTACTAAAATACCTTGTTAATAGGCCAGTATTTCTTTTCAACTAACTAGCTTCCTCTTGCATAAAAAAATTTTAAACAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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