Basic Information
VIS ID
TVIS30010683
Fusion event
HIV-DIRC1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
189654618/188789891 (Hg38)
End
189654618/188789891 (Hg38)
Orient
-
Location type
UTR5
Target gene
DIRC1
Nearest miRNA
hsa-mir-10b/Upstream/492303; hsa-mir-1244-1/Downstream/188201;
Nearest TSS
ENST00000437798/Upstream/200300; ENST00000470167/Downstream/213;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/496899, chr2-CpG: 26/Downstream/651540
Upstream sequence
CTGTCCTGGCCTAAAATCTTATGATTGAGAAATGAGTGCCATAGCCAACCCACCATTTTGACAGAGCTCACCTGAATTTTTCCTTCTGGTGATGAGAAGC
Downstream sequence
AATGCCAGAATTTCTACTCCAGCCATCTTCACACTTGTGGAGAGAAATTCAATAGTGATACATTtgtagtgaggagaaagatgtgttagcttaacaactg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate