Basic Information
VIS ID
TVIS30010685
Fusion event
HIV-STAT4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
191928757/191064031 (Hg38)
End
191928757/191064031 (Hg38)
Orient
+
Location type
Intronic
Target gene
STAT4
miRNAs that regulate target gene
hsa-mir-141-3p
Nearest miRNA
hsa-mir-10b/Upstream/1930920; hsa-mir-1244-1/Downstream/15719203;
Nearest TSS
ENST00000437798/Upstream/22348; ENST00000420448/Downstream/86940;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/43340, chr2-CpG: 100/Downstream/181313
Upstream sequence
AGAATCAATTTTAGATTTTAACTGAACAGTTTCTTTCTTTTTCATATTTTCCAATTGTTCCTTCAATCAAATAGTTTTATTTTGCATTTATGACATGGAA
Downstream sequence
AACCCTATGAACATTTTAATCTTCTAATGCAAAGGATAGTATCTACATTTCATTGCATGTGTGCATACATAGATCGGGAATGCCAGCTTGTATTAACCAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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