Basic Information
VIS ID
TVIS30010686
Fusion event
HIV-LOC105376755 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q32.3
Reference genome
GRCh37/hg19
Start
196291019/195426295 (Hg38)
End
196291019/195426295 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105376755
Nearest miRNA
hsa-mir-10b/Upstream/6293184; hsa-mir-1244-1/Downstream/11356939;
Nearest TSS
ENST00000437798/Upstream/399925; ENST00000413290/Downstream/22237;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/3230209, chr2-CpG: 150/Downstream/230536
Nearby gene
SLC39A10(No orient, 230513)
Upstream sequence
atatatttaaatatataagtatatatttatTTGtaaataataaatatttatttatttaCAGGAAAGAGAAATTATACCGATTGTAAAAATTGCATTAAAG
Downstream sequence
ATTATAAATAAAGTTTCCAAAAATATTGATTAAATAGATATTAGATTAGTATCTTATTGTATGTACCATATTAGAATTAAAAAGCAATATGAAATTTTTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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