VISDB Viral Integration Site DataBase

VIS ID

TVIS30010687

Fusion event

HIV-SATB2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q33.1

Reference genome

Start

End

200282080/199417357 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-31-5p ; hsa-mir-34a-5p ; hsa-mir-192-5p ; hsa-mir-320b ; hsa-mir-505-5p ; hsa-mir-320a ; hsa-mir-149-5p ; hsa-mir-182-5p ; hsa-mir-5096 ; hsa-mir-6837-3p ; hsa-mir-218-5p ; hsa-mir-7150 ; hsa-mir-548au-3p ; hsa-mir-4696 ; hsa-mir-548an ; hsa-mir-449b-5p ; hsa-mir-34c-5p ; hsa-mir-449a ; hsa-mir-6126 ; hsa-mir-1468-5p ; hsa-mir-4493 ; hsa-mir-4708-3p ; hsa-mir-605-3p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-3714 ; hsa-mir-454-3p ; hsa-mir-130b-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130a-3p ; hsa-mir-3653-5p ; hsa-mir-1976 ; hsa-mir-5007-5p ; hsa-mir-6499-3p ; hsa-mir-6733-3p ; hsa-mir-4445-5p ; hsa-mir-6766-3p ; hsa-mir-4782-3p ; hsa-mir-219a-5p ; hsa-mir-508-3p ; hsa-mir-33a-5p ; hsa-mir-599 ; hsa-mir-211-5p ; hsa-mir-205-5p ; hsa-mir-186-3p ; hsa-mir-203a-3p ; hsa-mir-2115-3p ; hsa-mir-3125 ; hsa-mir-3177-5p ; hsa-mir-3185 ; hsa-mir-3609 ; hsa-mir-3916 ; hsa-mir-5197-3p ; hsa-mir-520g-3p ; hsa-mir-520h ; hsa-mir-548ah-5p ; hsa-mir-5680 ; hsa-mir-671-5p ; hsa-mir-6859-5p

Nearest miRNA

hsa-mir-10b/Upstream/10284246; hsa-mir-1244-1/Downstream/7365877;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/1611927, chr2-CpG: 315/Downstream/38422

Upstream sequence

TAAAAAGGAACCATGATTCAAGGGTGACAAGTTCAGTTCTCATTACATTCAAATTTTCCAGCATACAAATACCTACTGACAACGCATCCCCAGAGGAAAT

Downstream sequence

CATTTACATCCCTTCTGCTCCACATAGTCCCAGATGTGCTTTGAGGCAGTTCCACAAGTGGAACCACTTGAGAAGAAGAGAAAAGATATGAGCAACTATT