Fusion event
HIV-PTPRA integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
2883911/2903265 (Hg38)
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-1292/Upstream/250423; hsa-mir-1-1/Downstream/1014229;
Upstream sequence
aagaatgctcaattggtaagtaagtgtaatgcaaatattccaacatctttaaaaacctgaaatccaaaccacgtctggttccaagcattttggataaggg
Downstream sequence
atactcaacctgtaaataatgtctgtttcatggggttgtgatgtggagtaagtgagcaaagttgtgtaatgtgcctagcttatagggaacacttagcaaa
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.