Basic Information
VIS ID
TVIS30010704
Fusion event
HIV-chr20 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
p12.2
Reference genome
GRCh37/hg19
Start
11766725/11786077 (Hg38)
End
11766725/11786077 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA20B
Nearest miRNA
hsa-mir-103a-2/Upstream/1136382; hsa-mir-1-1/Downstream/6684538;
Nearest TSS
ENST00000382410/Upstream/98754; ENST00000450368/Downstream/24349;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/98728, chr20-CpG: 126/Downstream/104649
Nearby gene
LINC00687(No orient, 23910)
Upstream sequence
aattccacctcattttaatactaaaaccccaccccaaagtgaacatagggtgtatgtaacacatatgcttacccagtgagcaaataagtgcctgactttc
Downstream sequence
ccagtgaatattcatagaatttctgcaacactgctcaatatgtatgtAAGACTGTGTAAGTGAAACTGAGGAGTTAATTTGATCAGGTCTGTGTGGCCtg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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