Home
Browse
Prime browse
Clustered VIS browse
Search
Curation
Gene
Target gene
All
Oncogene
Tumor suppressor gene
Nearby gene
All
Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
Download
Statistics
Help
VISDB
Viral Integration Site DataBase
Homepage
Prime VIS Browse Options
TVIS30010720
Basic Information
VIS ID
TVIS30010720
Fusion event
HIV-STAU1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.13
Reference genome
GRCh37/hg19
Start
47767681/49151144 (Hg38)
End
47767681/49151144 (Hg38)
Orient
-
Location type
Intronic
Target gene
STAU1
miRNAs that regulate target gene
hsa-mir-132-3p
;
hsa-mir-27a-3p
;
hsa-mir-16-5p
;
hsa-mir-877-5p
;
hsa-mir-30e-5p
;
hsa-mir-5011-5p
;
hsa-mir-218-5p
;
hsa-mir-30e-3p
;
hsa-mir-30d-3p
;
hsa-mir-30a-3p
;
hsa-mir-6513-5p
;
hsa-mir-5089-5p
;
hsa-mir-6728-5p
;
hsa-mir-769-3p
;
hsa-mir-450b-3p
;
hsa-mir-222-5p
;
hsa-mir-190a-3p
;
hsa-mir-374b-5p
;
hsa-mir-374a-5p
;
hsa-mir-3147
;
hsa-mir-4425
;
hsa-mir-1290
;
hsa-mir-16-1-3p
;
hsa-mir-4781-3p
;
hsa-mir-218-2-3p
;
hsa-mir-30d-5p
;
hsa-mir-30c-5p
;
hsa-mir-30b-5p
;
hsa-mir-30a-5p
;
hsa-mir-9-5p
Nearest miRNA
hsa-mir-103a-2/Upstream/1984086; hsa-mir-1-1/Downstream/712715;
Nearest TSS
ENST00000382410/Upstream/60381;
ENST00000462328/Downstream/2924;
Nearest CpG islands
None/Target,
chr20-CpG: 39/Upstream/104232
,
chr20-CpG: 83/Downstream/36672
Upstream sequence
acacccttgccaagcccagcctcaatcacagactcataagcaaaataaatgcctggagatgtttaaaccatcactaaattctatgatggtctgttatgag
Downstream sequence
gcaaaaggtaactggCGCTTCTATATAATCAAGAGTGGCTGGTAAAAAACAGCTTCAGAAAATCCTCTAACCTGGTACCCATATATCACAGTAGATTCTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Jurkat CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
Download
Curate