Basic Information
VIS ID
TVIS30010725
Fusion event
HIV-TAF4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
60612495/62037439 (Hg38)
End
60612495/62037439 (Hg38)
Orient
-
Location type
Intronic
Target gene
TAF4
miRNAs that regulate target gene
hsa-mir-19b-3p ; hsa-mir-7-5p ; hsa-mir-93-5p ; hsa-mir-19a-3p
Nearest miRNA
hsa-mir-103a-2/Upstream/83777; hsa-mir-1-1/Downstream/27363;
Nearest TSS
ENST00000382410/Upstream/24556; ENST00000635124/Downstream/26927;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/30633, chr20-CpG: 25/Downstream/15802
Upstream sequence
tcacgcctatctttgaagaaaatcctaagaaatccacaGGATATAAAGTCAATTTTTTTTATTTTAATTGCATTTATTGTATGCTGAGTTTATTCCCATG
Downstream sequence
CCACAAGTTTTTGTTTCTTCAGTTTCTTCTGGTACAGTTTTCCTCTGTGCAACTTCCTCACCTGGCTTGGGAACAAGTGTCTTTACCGTGAGGATCGTCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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