Basic Information
VIS ID
TVIS30010726
Fusion event
HIV-LOC105372717 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
61497022/62865670 (Hg38)
End
61497022/62865670 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105372717
Nearest miRNA
hsa-mir-1-1/Upstream/300657; hsa-mir-124-3/Downstream/312830;
Nearest TSS
ENST00000382410/Upstream/3907; ENST00000497101/Downstream/48736;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/3396, chr20-CpG: 22/Downstream/11393
Nearby gene
TCFL5(No orient, 3907)
Upstream sequence
acacgggacaaatagagaataaatagcaagatagtagatttaaatccaataaaaaaaaatcacatgagatgtaaaaggtttaaacacgtcaatgagaaag
Downstream sequence
cagagaccagaatggataaaaagtcagaacttggaggccgggcgcggtggctcacgcctgtaatcccagcactctgggaggccgaggcgggcggatcaca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate