VISDB Viral Integration Site DataBase

VIS ID

TVIS30010727

Fusion event

HIV-YTHDF1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr20

Cytoband

q13.33

Reference genome

Start

End

61839156/63207804 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-331-3p ; hsa-mir-301a-3p ; hsa-mir-149-5p ; hsa-mir-218-5p ; hsa-mir-3658 ; hsa-mir-3653-3p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-576-3p ; hsa-mir-4282 ; hsa-mir-3529-3p ; hsa-mir-499a-5p ; hsa-mir-208b-3p ; hsa-mir-5582-3p ; hsa-mir-208a-3p ; hsa-mir-4725-5p ; hsa-mir-345-3p ; hsa-mir-3065-5p ; hsa-mir-365b-3p ; hsa-mir-365a-3p ; hsa-mir-4422 ; hsa-mir-6835-3p ; hsa-mir-186-5p ; hsa-mir-421 ; hsa-mir-505-3p ; hsa-mir-7159-5p ; hsa-mir-5591-3p ; hsa-mir-3148 ; hsa-mir-4709-5p ; hsa-mir-4272 ; hsa-mir-660-5p ; hsa-mir-8485 ; hsa-mir-7853-5p ; hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-921 ; hsa-mir-3606-5p ; hsa-mir-655-3p ; hsa-mir-374c-5p ; hsa-mir-6820-3p ; hsa-mir-3164 ; hsa-mir-6505-3p ; hsa-mir-617 ; hsa-mir-378g ; hsa-mir-4486 ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-139-5p ; hsa-mir-1298-3p ; hsa-mir-7151-5p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-369-3p ; hsa-mir-3159 ; hsa-mir-4700-3p ; hsa-mir-551b-5p ; hsa-mir-8054 ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-548n ; hsa-mir-548c-3p ; hsa-mir-376c-3p ; hsa-mir-3942-3p ; hsa-mir-6828-3p ; hsa-mir-6081 ; hsa-mir-767-3p ; hsa-mir-1251-5p ; hsa-mir-517-5p ; hsa-mir-5697 ; hsa-mir-1244

Nearest miRNA

hsa-mir-1-1/Upstream/29218; hsa-mir-1914/Downstream/30975;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/16648, chr20-CpG: 19/Downstream/7687

Upstream sequence

AGAAAGGCTAACACATTTTTAgccgggcacagtggctctggcctgtaatcccagcactttgggaggccgaggcaggtgaatcacaaggtcaggagttcga

Downstream sequence

gactagtctgatcaatatggttaaaccccgtctctactaaaccgggtatggtggcaggcacctgtagtcccagctactccggagcctgaggcaggagaat