Basic Information
VIS ID
TVIS30010737
Fusion event
HIV-chr21 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
43605155/42185045 (Hg38)
End
43605155/42185045 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7c/Upstream/438204; hsa-mir-5692b/Downstream/765883;
Nearest TSS
ENST00000624081/Upstream/57367; ENST00000450121/Downstream/14644;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/57066, chr21-CpG: 100/Downstream/33793
Nearby gene
ABCG1(No orient, 14644)
Upstream sequence
gagttattttgaacccccaaatctgattgttcagtgtggatcagtataccactgCTTAAAGCCGTGGCTTTTTGGCTTTCCAGGTTGATGAGGCCTCACT
Downstream sequence
CTCCCCTTATATCGGTCAGAATAGTTCCTTAGCAATACGGGAAGCTACTCTCCTGTTAAGATCTGTTAAGATGTGAGTATggccgggtgtggtggctcac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate