Basic Information
VIS ID
TVIS30010738
Fusion event
HIV-chr21 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
45761128/44341245 (Hg38)
End
45761128/44341245 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7c/Upstream/731256; hsa-mir-6815/Downstream/1137021;
Nearest TSS
ENST00000624081/Upstream/1843; ENST00000431901/Downstream/7050;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/1603, chr21-CpG: 141/Downstream/8659
Nearby gene
CFAP410(-1828) ; TRPM2(+8867) ;
Upstream sequence
AGCTTAGCAGCtgtgaatccaaaatatctgagacaggactcaatctgtttagaaagtttattttgtcaaggttaaggacaagcccatgacacagcctcag
Downstream sequence
gaggtcctgatgacatgtgccctgggtggctggggcacagcttgctttcatacatttttagggagacatgagacatcaatcaatatgtgtaagatgGAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate