Basic Information
VIS ID
TVIS30010741
Fusion event
HIV-XKR3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
17279366/16798476 (Hg38)
End
17279366/16798476 (Hg38)
Orient
-
Location type
Intronic
Target gene
XKR3
Nearest miRNA
hsa-let-7a-3/Downstream/965704;
Nearest TSS
ENST00000624155/Upstream/49831; ENST00000442403/Downstream/23223;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/100561, chr22-CpG: 66/Downstream/208908
Upstream sequence
tataagttagatcagccattgtggaaagcactctggaagtttctcaaagaatttaatacagagctaccatttcaacccagcaatcccattagtgggtatg
Downstream sequence
tacccaaaggaatataaatcattctaggtccaagacacatacagtcatatgttcattgctgcactattcaccatagcaaagacatgggatcaactcaggt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate