VISDB Viral Integration Site DataBase

VIS ID

TVIS30010747

Fusion event

HIV-CRKL integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr22

Cytoband

q11.21

Reference genome

Start

End

21298090/20943802 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-107 ; hsa-mir-15a-5p ; hsa-mir-126-3p ; hsa-mir-98-5p ; hsa-mir-32-5p ; hsa-mir-16-5p ; hsa-let-7b-5p ; hsa-mir-193b-5p ; hsa-mir-425-5p ; hsa-mir-23b-3p ; hsa-mir-29a-3p ; hsa-mir-5002-3p ; hsa-mir-6867-5p ; hsa-mir-31-3p ; hsa-mir-922 ; hsa-mir-3134 ; hsa-mir-3944-5p ; hsa-mir-4534 ; hsa-mir-1245b-3p ; hsa-mir-8082 ; hsa-mir-622 ; hsa-mir-3158-5p ; hsa-mir-650 ; hsa-mir-1827 ; hsa-mir-3612 ; hsa-mir-4459 ; hsa-mir-4695-5p ; hsa-mir-1252-5p ; hsa-mir-3908 ; hsa-mir-6770-5p ; hsa-mir-7112-5p ; hsa-mir-4290 ; hsa-mir-371b-3p ; hsa-mir-541-5p ; hsa-mir-3159 ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-7-5p ; hsa-mir-214-3p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-330-3p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-761 ; hsa-mir-3065-5p ; hsa-mir-3619-5p ; hsa-mir-3529-3p ; hsa-mir-6165 ; hsa-mir-6838-5p ; hsa-mir-4433a-3p ; hsa-mir-17-3p ; hsa-mir-1205 ; hsa-mir-1184 ; hsa-mir-1253 ; hsa-mir-3667-5p ; hsa-let-7c-3p ; hsa-mir-873-5p ; hsa-mir-944 ; hsa-mir-340-5p ; hsa-mir-143-5p ; hsa-mir-1255b-5p ; hsa-mir-1255a ; hsa-mir-6744-5p ; hsa-mir-103a-3p ; hsa-mir-455-5p ; hsa-mir-1273g-3p ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-661 ; hsa-mir-4252 ; hsa-mir-5186 ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-6742-3p ; hsa-mir-6849-3p ; hsa-mir-508-5p ; hsa-mir-665 ; hsa-mir-887-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-4680-5p ; hsa-mir-4649-3p ; hsa-mir-3664-3p ; hsa-mir-4768-3p ; hsa-mir-5690 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-890 ; hsa-mir-510-5p ; hsa-mir-335-5p ; hsa-mir-320a ; hsa-mir-200b-3p ; hsa-mir-200c-3p ; hsa-mir-429 ; hsa-mir-125a-3p ; hsa-mir-203a-5p ; hsa-mir-218-1-3p ; hsa-mir-3692-3p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-876-3p

Nearest miRNA

hsa-mir-1286/Upstream/694591; hsa-let-7a-3/Downstream/90374;

Nearest TSS

Nearest CpG islands

None/Target, chr22-CpG: 279/Upstream/25474, chr22-CpG: 64/Downstream/13246

Nearest cancer related gene

CRKL(OG, No orient, 0)

Upstream sequence

gttggccaagctgggtgtggtggtgcacacctgtaatcccaggtaccctggagactgaggtgagaagattgcttgagcctaggagttgaagatcagcctg

Downstream sequence

ggctacatagtgagactcccacgtgttaaaaaaaaatcacttgatcataaatgtgtgggtttatttttgacctctgagttctattccattgttctatatg