Basic Information
VIS ID
TVIS30010769
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
17999571/17958079 (Hg38)
End
17999571/17958079 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12127/Upstream/1024819; hsa-let-7g/Downstream/1356769;
Nearest TSS
ENST00000440867/Upstream/215331; ENST00000449613/Downstream/31944;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/215116, chr3-CpG: 19/Downstream/467869
Nearby gene
LOC339862(No orient, 4493)
Upstream sequence
gcatggtggctcatgcctgtaatcccagataccagtgctttgaaaggccaaggcaggagtagagtattgcttgaggctatgagttcaagaccagcctggg
Downstream sequence
taatctagtgagactccatctctaaattaaaaaaaaaaaaaaagctgagcatagtagcatacacctgtggttctagctacttgggaagctgaggcaggag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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