Basic Information
VIS ID
TVIS30010786
Fusion event
HIV-ARIH2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.31
Reference genome
GRCh37/hg19
Start
48986962/48949529 (Hg38)
End
48986962/48949529 (Hg38)
Orient
+
Location type
Intronic
Target gene
ARIH2
miRNAs that regulate target gene
hsa-mir-221-3p ; hsa-mir-19a-3p ; hsa-mir-93-5p ; hsa-mir-1301-3p ; hsa-mir-342-3p ; hsa-mir-1229-5p ; hsa-mir-1304-5p ; hsa-mir-6134 ; hsa-mir-6769a-5p ; hsa-mir-6806-5p ; hsa-mir-6769b-5p ; hsa-mir-8055 ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-3132 ; hsa-mir-197-5p ; hsa-mir-7854-3p ; hsa-mir-449c-5p ; hsa-mir-34b-5p ; hsa-mir-2682-5p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-610 ; hsa-mir-4319 ; hsa-mir-125b-5p ; hsa-mir-125a-5p ; hsa-mir-6777-3p ; hsa-mir-5195-5p
Nearest miRNA
hsa-mir-12127/Upstream/305249; hsa-let-7g/Downstream/70619;
Nearest TSS
ENST00000440867/Upstream/6343; ENST00000459976/Downstream/15389;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/30024, chr3-CpG: 130/Downstream/40154
Upstream sequence
actgttttccaaagtggctctactactttacattcccactagcattatgtaagggttccagtttctctgcttccttgttagcacttggtattttaggtct
Downstream sequence
tctggattataatcattctagtgagtgtgtaataccttgtggttttaatttgcattccctaatgactagtgtcattaaccactaatgtaattaatgatct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate