Basic Information
VIS ID
TVIS30010788
Fusion event
HIV-QRICH1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.31
Reference genome
GRCh37/hg19
Start
49128437/49091004 (Hg38)
End
49128437/49091004 (Hg38)
Orient
-
Location type
Intronic
Target gene
QRICH1
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-186-5p ; hsa-mir-15b-5p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-12127/Upstream/70295; hsa-let-7g/Downstream/8850;
Nearest TSS
ENST00000440867/Upstream/33129; ENST00000476495/Downstream/2607;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/61454, chr3-CpG: 114/Downstream/2240
Upstream sequence
GCAGTACAACAGAATAACAGAAAAGAACAGGTAATAggccaggcgcggtggctcacgcctgtaatcccagcactttgggaggccaaggtgggaggatccc
Downstream sequence
gaggtcaggagattgagaccatcctggctaacagagtaaaaccccgtttctactaaaaaatacaaaaaatgagacaggcatggtggcgggagcctgcagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate