Basic Information
VIS ID
TVIS30010795
Fusion event
HIV-DCP1A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
53364696/53330669 (Hg38)
End
53364696/53330669 (Hg38)
Orient
+
Location type
Intronic
Target gene
DCP1A
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-21-5p ; hsa-mir-4279 ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6778-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4532 ; hsa-mir-1247-3p ; hsa-mir-6513-3p ; hsa-mir-8062 ; hsa-mir-562 ; hsa-mir-1208 ; hsa-mir-1304-3p ; hsa-mir-143-5p ; hsa-mir-24-3p ; hsa-mir-3650 ; hsa-mir-4284 ; hsa-mir-5586-3p ; hsa-mir-6499-3p ; hsa-mir-6760-3p ; hsa-mir-6890-3p ; hsa-mir-8057 ; hsa-mir-129-5p ; hsa-mir-1304-5p ; hsa-mir-1323 ; hsa-mir-548o-3p ; hsa-mir-8055
Nearest miRNA
hsa-let-7g/Upstream/484117; hsa-mir-12124/Downstream/2521823;
Nearest TSS
ENST00000440867/Upstream/1706; ENST00000636480/Downstream/16855;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/74649, chr3-CpG: 54/Downstream/16649
Upstream sequence
TGACATAGAAAGTTCTAACGCAGTTTAGTAACTTCAGCTTATAATTTTCTAAGAAAATATAATAGAACCTAAGGACTAAAAATATAAACAAAATTCTTTA
Downstream sequence
TAAGCGCACAGTAGTTTTAATCTATATGGTATAGCAGCTGGTAAAGTGCTTGGCAAATGACATATTCAATAAATGTCACTGAATTAAGGTATGTATCCGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate