Basic Information
VIS ID
TVIS30010796
Fusion event
HIV-CCDC66 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
56608615/56574587 (Hg38)
End
56608615/56574587 (Hg38)
Orient
+
Location type
Intronic
Target gene
CCDC66
Nearest miRNA
hsa-let-7g/Upstream/721993; hsa-mir-12124/Downstream/4043218;
Nearest TSS
ENST00000440867/Upstream/7636; ENST00000468108/Downstream/19125;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/17392, chr3-CpG: 120/Downstream/107877
Upstream sequence
CAGTTGTTTTCAGAAATCCCAGCTGTAGCCACAACTATTTATACTATTTGAATATCTAGTTAGTCTCTCCATATAATTGGGAGGGAAAGAAGTTTGGTTG
Downstream sequence
TAGGCAGTCACCAAAGCCTtgagtgttaaaacatgaggtaatgcatatgaagtgcttagaatagtgactgacaatagaacaaatgctaacaaagttttgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate