Basic Information
VIS ID
TVIS30010806
Fusion event
HIV-SENP7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
101091165/101372321 (Hg38)
End
101091165/101372321 (Hg38)
Orient
-
Location type
Intronic
Target gene
SENP7
miRNAs that regulate target gene
hsa-let-7a-3p ; hsa-mir-421
Nearest miRNA
hsa-let-7g/Upstream/1407923; hsa-mir-12124/Downstream/2151712;
Nearest TSS
ENST00000440867/Upstream/24408; ENST00000495642/Downstream/140863;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/662496, chr3-CpG: 48/Downstream/140445
Upstream sequence
CACAGTCCCACATGGCAGACTATAAGATCTGGGTAGTAAAAAAAATATTGAACTCAGATTTAAGAAATAAGTTATCCTCCCTTTTCTACCTTTAAATTCC
Downstream sequence
CCATGTGTGTTTAGGGGGAAAAAAAATGAGATATCAACATTGGAGGATTGTGTACATGCAAAATGAGCAAAAGAGTAATACTATACAAGTATTAAATTAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate