Basic Information
VIS ID
TVIS30010813
Fusion event
HIV-LOC107986022 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q13.32
Reference genome
GRCh37/hg19
Start
117592892/117874045 (Hg38)
End
117592892/117874045 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107986022
Nearest miRNA
hsa-let-7g/Upstream/1023678; hsa-mir-12124/Downstream/2210519;
Nearest TSS
ENST00000440867/Upstream/83372; ENST00000477009/Downstream/123547;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/2089311, chr3-CpG: 75/Downstream/122672
Nearby gene
LINC00901(No orient, 941807)
Upstream sequence
TCTAAACACGATTCCAAATGACTTATCTTGTGAACCATTGTCACATACTTAGGCTAAATTCCATAGGAAACTGGCCCTGACATGCTTTAGGCGAAAGTTA
Downstream sequence
ATTCTTCATGATACAAAGAGTTAAAGGCAAGTCCTAGTCAATAGAATGGGACTGGTTGCAAACACCAATAGACCTCTGCGTTTCTATAAAAGACAACAGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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