Basic Information
VIS ID
TVIS30010817
Fusion event
HIV-OSBPL11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
125275528/125556684 (Hg38)
End
125275528/125556684 (Hg38)
Orient
-
Location type
Intronic
Target gene
OSBPL11
miRNAs that regulate target gene
hsa-mir-148b-3p ; hsa-mir-7-5p ; hsa-mir-615-3p
Nearest miRNA
hsa-let-7g/Upstream/405132; hsa-mir-12124/Downstream/233720;
Nearest TSS
ENST00000440867/Upstream/36487; ENST00000610060/Downstream/38406;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/36327, chr3-CpG: 54/Downstream/38458
Upstream sequence
TTTCACAAGAAAGGGCTCTTCTAAACTTTCTCAATAACTTATAAGAAGCTAAAGCCAGAGACTCAAATGTTTAACTTGTCTTTTTCTGGGAGCTGCTTTC
Downstream sequence
TACAAATGGCAACACAGTCCTTTCCTTATGCTAAGCTTATGTTAGCTATTCATTTTTTCCTAAACATCATTATGGAGTACAAAAAAGCAgtaaaactata
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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