Basic Information
VIS ID
TVIS30010829
Fusion event
HIV-NAALADL2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q26.31
Reference genome
GRCh37/hg19
Start
175068058/175350269 (Hg38)
End
175068058/175350269 (Hg38)
Orient
-
Location type
Intronic
Target gene
NAALADL2
Nearest miRNA
hsa-let-7g/Upstream/4243510; hsa-mir-1224/Downstream/19271;
Nearest TSS
ENST00000440867/Upstream/79173; ENST00000617758/Downstream/426064;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/908711, chr3-CpG: 133/Downstream/1846180
Upstream sequence
TTTCCTTTTGGTTTTGATACTCCTTGCTCTCTGTTATATTTACTCATTTATTAAAATATTAGACAAGATAAAGCAATAAAGGCAGTAAAAATATACTCCT
Downstream sequence
GTTGCAAACAATTTATTCTGATAAACTGATTAAAAATAAATTCCAACTTAAGTCCTATGTTGAGGTAGAGAAGCAGTGAGAAGCAGATATCTGTCTCTGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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