Basic Information
VIS ID
TVIS30010830
Fusion event
HIV-MFN1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q26.33
Reference genome
GRCh37/hg19
Start
179084851/179367063 (Hg38)
End
179084851/179367063 (Hg38)
Orient
+
Location type
Intronic
Target gene
MFN1
miRNAs that regulate target gene
hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-92b-3p ; hsa-mir-5089-5p ; hsa-mir-7158-3p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-5009-3p ; hsa-mir-6872-3p ; hsa-mir-1295b-3p ; hsa-mir-512-3p ; hsa-mir-3186-5p ; hsa-mir-7153-3p ; hsa-mir-526b-3p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-302e ; hsa-mir-302a-3p ; hsa-mir-520c-3p ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-520e ; hsa-mir-302d-3p ; hsa-mir-520d-3p ; hsa-mir-372-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-520b
Nearest miRNA
hsa-let-7g/Upstream/2851912; hsa-mir-1224/Downstream/4519737;
Nearest TSS
ENST00000440867/Upstream/4705; ENST00000466287/Downstream/9859;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/18872, chr3-CpG: 69/Downstream/83884
Upstream sequence
gtcacccaggctggagtacaggggcacgatcttggctcactgcagcctccacctcctgggctcaagcgactctcctgcctcagcctgcccagtagctggg
Downstream sequence
attaccggcacctgccaccacacccagctaatttttgtgtttttaataaagacgaggtttcaccatgttgtccaggctgttctcaaactcctgacctcgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate