VISDB Viral Integration Site DataBase

VIS ID

TVIS30010837

Fusion event

HIV-FYTTD1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

q29

Reference genome

Start

End

197501986/197775115 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-374b-5p ; hsa-mir-375 ; hsa-mir-222-3p ; hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-488-3p ; hsa-mir-569 ; hsa-mir-570-5p ; hsa-mir-548m ; hsa-mir-548ag ; hsa-mir-548ai ; hsa-mir-3529-3p ; hsa-mir-5681a ; hsa-mir-6730-5p ; hsa-mir-548ba ; hsa-mir-4276 ; hsa-mir-5190 ; hsa-mir-5094 ; hsa-mir-618 ; hsa-mir-379-3p ; hsa-mir-411-3p ; hsa-mir-3688-5p ; hsa-mir-4470 ; hsa-mir-1468-3p ; hsa-mir-5693 ; hsa-mir-5571-5p ; hsa-mir-5692a ; hsa-mir-548s ; hsa-mir-3926 ; hsa-mir-4786-5p ; hsa-mir-570-3p ; hsa-mir-3190-5p ; hsa-mir-6849-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-6089 ; hsa-mir-1827 ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-383-3p ; hsa-mir-1288-5p ; hsa-mir-6765-3p ; hsa-mir-3622b-3p ; hsa-mir-3622a-3p ; hsa-mir-1228-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-1227-3p ; hsa-mir-1343-3p ; hsa-mir-17-3p ; hsa-mir-3192-5p ; hsa-mir-4537 ; hsa-mir-4661-3p ; hsa-mir-485-5p ; hsa-mir-5186 ; hsa-mir-550b-2-5p ; hsa-mir-6742-3p ; hsa-mir-6783-3p ; hsa-mir-6852-5p ; hsa-mir-6884-5p ; hsa-mir-939-3p

Nearest miRNA

hsa-let-7g/Upstream/100539;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/24530, chr3-CpG: 87/Downstream/15997

Upstream sequence

TAGATTACTTCatttttattatttttattttttattGGCTATACCATTTTAATGAAACAGCTTTTTCTTTTTCTTTTTTTTGCTATAACTGCTTTCATAC

Downstream sequence

AAATGAACCTATTTAGGGAATGAATAGAATAAAATTCAGTGGAGCTTTTAGAACATTTGTACAACTTTAAAAACAATAGTTTTCCTTTTCACAGTCTTTT