Basic Information
VIS ID
TVIS30010842
Fusion event
HIV-LOC101929095 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p15.32
Reference genome
GRCh37/hg19
Start
15033669/15032045 (Hg38)
End
15033669/15032045 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA4D
Target gene
LOC101929095
Nearest miRNA
hsa-mir-12113/Upstream/1404088; hsa-mir-12115/Downstream/5496230;
Nearest TSS
ENST00000502981/Upstream/24678; ENST00000509684/Downstream/22088;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/26908, chr4-CpG: 145/Downstream/622696
Upstream sequence
TTGCTGAGGTGGTAAAGGTAGATGCAGTTCATCTGTACTCCTTACTTGTGTGCTAGCATATTATTTTGTTTTTAAAGGGACTGTGCTGAAAATTACTAAA
Downstream sequence
ATGTAATCCCAGACATTTAATTTTTAGACATTTTTCAAATCAGTTAAAAAAAttttttttcatttgttgagagacagggtcttgccctgttgctcaggcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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