Basic Information
VIS ID
TVIS30010847
Fusion event
HIV-N4BP2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p14
Reference genome
GRCh37/hg19
Start
40140667/40139047 (Hg38)
End
40140667/40139047 (Hg38)
Orient
-
Location type
Intronic
Target gene
N4BP2
miRNAs that regulate target gene
hsa-mir-192-5p ; hsa-mir-100-5p ; hsa-mir-99a-5p ; hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-200b-3p ; hsa-mir-30b-5p ; hsa-mir-200c-3p ; hsa-mir-30e-5p ; hsa-mir-429 ; hsa-mir-3607-3p ; hsa-mir-4452 ; hsa-mir-183-3p ; hsa-mir-1183 ; hsa-mir-8084 ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-4753-3p ; hsa-mir-130b-5p
Nearest miRNA
hsa-mir-12113/Upstream/727073; hsa-mir-1243/Downstream/362993;
Nearest TSS
ENST00000502981/Upstream/36140; ENST00000514143/Downstream/52006;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/81783, chr4-CpG: 118/Downstream/298757
Upstream sequence
gtgaatttctgcaaagaagccagctagaattttgatggggttcgtgttgaatatgtagaccaattaacaatattaagtctttcaattcatgaaatggagt
Downstream sequence
atctttcagttatttaggtcttctttaatttccttcaacaatgcactatagttttcagagtataaattttacacatcttttgttaagtttatttctaaat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate