Basic Information
VIS ID
TVIS30010848
Fusion event
HIV-LOC101927179 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p12
Reference genome
GRCh37/hg19
Start
47878267/47876250 (Hg38)
End
47878267/47876250 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC101927179
Nearest miRNA
hsa-mir-12113/Upstream/223507; hsa-mir-1243/Downstream/4836432;
Nearest TSS
ENST00000502981/Upstream/1044; ENST00000500571/Downstream/894;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/38321, chr4-CpG: 80/Downstream/37594
Upstream sequence
TAAAAATAttattttataaattattttttaaaaacatgtgccaggcattgttcttggcactgggaagacatgagataggctcctggaacttacatttatg
Downstream sequence
tgaggaggtaaagaacatgaatataatgtcttcgtaactactctgaagaaagataaagcaggataagaaagagtgatggcagcaacaagaaggaagcctg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate