Basic Information
VIS ID
TVIS30010851
Fusion event
HIV-LOC107986284 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
65735342/64869624 (Hg38)
End
65735342/64869624 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107986284
Nearest miRNA
hsa-mir-12113/Upstream/3946940; hsa-mir-1243/Downstream/1407200;
Nearest TSS
ENST00000502981/Upstream/460156; ENST00000509473/Downstream/154861;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1519758, chr4-CpG: 32/Downstream/799851
Nearby gene
LINC02232(No orient, 44657)
Upstream sequence
GAGAGTTGAAGTGCTTTCCTAAAATTAGATTATAACTTGATATTTAATTTTTCATTTAGAAAGATTTTCCAAGAGGAAATTAAGAATTATCGTAACCATG
Downstream sequence
TTTGATTTTTAAATACATTCTTTCTTCATGCCTTTTTTCCAAGAAAATGACAGAAATGTTGTCTGCTGTACACTTCAGAAGAAATGAAAAGCAGAAAACA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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