Basic Information
VIS ID
TVIS30010853
Fusion event
HIV-CCNG2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
78081622/77160469 (Hg38)
End
78081622/77160469 (Hg38)
Orient
-
Location type
Intronic
Target gene
CCNG2
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-93-5p ; hsa-mir-503-5p ; hsa-mir-340-5p ; hsa-mir-93-3p
Nearest miRNA
hsa-mir-12113/Upstream/584843; hsa-mir-1243/Downstream/5592868;
Nearest TSS
ENST00000502981/Upstream/2043; ENST00000514756/Downstream/27295;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/2031, chr4-CpG: 161/Downstream/658084
Upstream sequence
TTTTTTAAATAGAGATGGAGGCTTGCTGTGTTGGCCAGAATAgtcttgctatgttggccagagtgttctcaaactcctggcctcaagcagtcctcccacc
Downstream sequence
tcagcctcccaaagtcctgggattacaggcatgagccactgttccctgcTGCCTTTTTTTTTGGGGGGGGGGGGAGGTCGAGAACGTCTAAAATGTGAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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