Basic Information
VIS ID
TVIS30010857
Fusion event
HIV-LOC112267901 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q23
Reference genome
GRCh37/hg19
Start
99588418/98667267 (Hg38)
End
99588418/98667267 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA4E
Target gene
LOC112267901
Nearest miRNA
hsa-mir-12113/Upstream/11366684; hsa-mir-1243/Downstream/330120;
Nearest TSS
ENST00000502981/Upstream/8363; ENST00000583654/Downstream/223631;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/8258, chr4-CpG: 102/Downstream/260887
Nearby gene
TSPAN5(No orient, 8606)
Upstream sequence
gtgttcccctatcactctcaatggacagagggcaaccatacagggcatgtaagtgttgcaatgccccgatgatgtgctgttggtcagccaccctgcaagg
Downstream sequence
gtaggcaaacaacaggcctgtgtccttgtccatagctgttaatgaatgcatatactcttgtgacttcagcagcagcctgatgtagtctaccagccatctg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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